Type | Visibility | Attributes | Name | Initial | |||
---|---|---|---|---|---|---|---|
character(len=20), | public | :: | growth_habit | ||||
character(len=2), | public | :: | growth_stage | ||||
integer(kind=int32), | public | :: | Num_Of_Node | ||||
integer(kind=int32), | public | :: | num_leaf | ||||
integer(kind=int32), | public | :: | num_stem_node | ||||
integer(kind=int32), | public | :: | Num_Of_Root | ||||
integer(kind=int32), | public | :: | MaxLeafNum | = | PF_DEFAULT_SOYBEAN_ASIZE | ||
integer(kind=int32), | public | :: | MaxRootNum | = | PF_DEFAULT_SOYBEAN_ASIZE | ||
integer(kind=int32), | public | :: | MaxStemNum | = | PF_DEFAULT_SOYBEAN_ASIZE | ||
logical, | public | :: | determinate | ||||
integer(kind=int32), | public | :: | ms_node | ||||
integer(kind=int32), | public | :: | br_node(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
integer(kind=int32), | public | :: | br_from(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | ms_length | ||||
real(kind=real64), | public | :: | br_length(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | ms_width | ||||
real(kind=real64), | public | :: | br_width(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | ms_angle_ave | ||||
real(kind=real64), | public | :: | br_angle_ave(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | ms_angle_sig | ||||
real(kind=real64), | public | :: | br_angle_sig(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
integer(kind=int32), | public | :: | mr_node | ||||
integer(kind=int32), | public | :: | brr_node(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
integer(kind=int32), | public | :: | brr_from(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | mr_length | ||||
real(kind=real64), | public | :: | brr_length(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | mr_width | ||||
real(kind=real64), | public | :: | brr_width(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | mr_angle_ave | ||||
real(kind=real64), | public | :: | brr_angle_ave(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | mr_angle_sig | ||||
real(kind=real64), | public | :: | brr_angle_sig(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | peti_size_ave(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | peti_size_sig(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | peti_width_ave(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | peti_width_sig(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | peti_angle_ave(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | peti_angle_sig(PF_DEFAULT_SOYBEAN_ASIZE) | ||||
real(kind=real64), | public | :: | leaf_angle_ave(PF_DEFAULT_SOYBEAN_ASIZE*3) | ||||
real(kind=real64), | public | :: | leaf_angle_sig(PF_DEFAULT_SOYBEAN_ASIZE*3) | ||||
real(kind=real64), | public | :: | leaf_length_ave(PF_DEFAULT_SOYBEAN_ASIZE*3) | ||||
real(kind=real64), | public | :: | leaf_length_sig(PF_DEFAULT_SOYBEAN_ASIZE*3) | ||||
real(kind=real64), | public | :: | leaf_width_ave(PF_DEFAULT_SOYBEAN_ASIZE*3) | ||||
real(kind=real64), | public | :: | leaf_width_sig(PF_DEFAULT_SOYBEAN_ASIZE*3) | ||||
real(kind=real64), | public | :: | leaf_thickness_ave(PF_DEFAULT_SOYBEAN_ASIZE*3) | ||||
real(kind=real64), | public | :: | leaf_thickness_sig(PF_DEFAULT_SOYBEAN_ASIZE*3) | ||||
character(len=3), | public | :: | Stage | ||||
character(len=200), | public | :: | name | ||||
integer(kind=int32), | public | :: | stage_id | = | 0 | ||
real(kind=real64), | public | :: | dt | ||||
type(Seed_), | public | :: | Seed | ||||
type(PlantNode_), | public, | allocatable | :: | NodeSystem(:) | |||
type(PlantRoot_), | public, | allocatable | :: | RootSystem(:) | |||
type(Stem_), | public, | allocatable | :: | Stem(:) | |||
type(Leaf_), | public, | allocatable | :: | Leaf(:) | |||
type(Root_), | public, | allocatable | :: | Root(:) | |||
type(Soil_), | public, | allocatable | :: | Soil | |||
real(kind=real64), | public, | allocatable | :: | stemYoungModulus(:) | |||
real(kind=real64), | public, | allocatable | :: | leafYoungModulus(:) | |||
real(kind=real64), | public, | allocatable | :: | rootYoungModulus(:) | |||
real(kind=real64), | public, | allocatable | :: | stemPoissonRatio(:) | |||
real(kind=real64), | public, | allocatable | :: | leafPoissonRatio(:) | |||
real(kind=real64), | public, | allocatable | :: | rootPoissonRatio(:) | |||
real(kind=real64), | public, | allocatable | :: | stemDensity(:) | |||
real(kind=real64), | public, | allocatable | :: | leafDensity(:) | |||
real(kind=real64), | public, | allocatable | :: | rootDensity(:) | |||
type(Mesh_), | public | :: | struct | ||||
integer(kind=int32), | public, | allocatable | :: | leaf2stem(:,:) | |||
integer(kind=int32), | public, | allocatable | :: | stem2stem(:,:) | |||
integer(kind=int32), | public, | allocatable | :: | root2stem(:,:) | |||
integer(kind=int32), | public, | allocatable | :: | root2root(:,:) | |||
type(FEMDomain_), | public, | allocatable | :: | leaf_list(:) | |||
type(FEMDomain_), | public, | allocatable | :: | stem_list(:) | |||
type(FEMDomain_), | public, | allocatable | :: | root_list(:) | |||
type(ContactMechanics_), | public | :: | contact | ||||
real(kind=real64), | public | :: | time | ||||
real(kind=real64), | public | :: | seed_length | ||||
real(kind=real64), | public | :: | seed_width | ||||
real(kind=real64), | public | :: | seed_height | ||||
real(kind=real64), | public, | allocatable | :: | stem_angle(:,:) | |||
real(kind=real64), | public, | allocatable | :: | root_angle(:,:) | |||
real(kind=real64), | public, | allocatable | :: | leaf_angle(:,:) | |||
character(len=200), | public | :: | stemconfig | = | " " | ||
character(len=200), | public | :: | rootconfig | = | " " | ||
character(len=200), | public | :: | leafconfig | = | " " | ||
integer(kind=int32), | public, | allocatable | :: | NodeID_MainStem(:) | |||
type(soybean_NodeID_Branch_), | public, | allocatable | :: | NodeID_Branch(:) | |||
logical, | public | :: | inLoop | = | .false. | ||
real(kind=real64), | public | :: | hours | = | 0.0d0 |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
integer(kind=int32), | intent(in) | :: | stemid | |||
real(kind=real64), | intent(in), | optional | :: | rotx | ||
real(kind=real64), | intent(in), | optional | :: | roty | ||
real(kind=real64), | intent(in), | optional | :: | rotz | ||
character(len=*), | intent(in), | optional | :: | json |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in), | optional | :: | config | ||
logical, | intent(in), | optional | :: | regacy | ||
real(kind=real64), | intent(in), | optional | :: | mass | ||
real(kind=real64), | intent(in), | optional | :: | water_content | ||
real(kind=real64), | intent(in), | optional | :: | radius | ||
real(kind=real64), | intent(in), | optional | :: | location(3) | ||
real(kind=real64), | intent(in), | optional | :: | x | ||
real(kind=real64), | intent(in), | optional | :: | y | ||
real(kind=real64), | intent(in), | optional | :: | z | ||
real(kind=real64), | intent(in), | optional | :: | PlantRoot_diameter_per_seed_radius | ||
integer(kind=int32), | intent(in), | optional | :: | max_PlantNode_num | ||
character(len=*), | intent(in), | optional | :: | Variety | ||
character(len=*), | intent(in), | optional | :: | FileName | ||
integer(kind=int32), | intent(in), | optional | :: | max_leaf_num | ||
integer(kind=int32), | intent(in), | optional | :: | max_stem_num | ||
integer(kind=int32), | intent(in), | optional | :: | max_root_num | ||
logical, | intent(in), | optional | :: | profiler |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in), | optional | :: | config | ||
logical, | intent(in), | optional | :: | regacy | ||
real(kind=real64), | intent(in), | optional | :: | mass | ||
real(kind=real64), | intent(in), | optional | :: | water_content | ||
real(kind=real64), | intent(in), | optional | :: | radius | ||
real(kind=real64), | intent(in), | optional | :: | location(3) | ||
real(kind=real64), | intent(in), | optional | :: | x | ||
real(kind=real64), | intent(in), | optional | :: | y | ||
real(kind=real64), | intent(in), | optional | :: | z | ||
real(kind=real64), | intent(in), | optional | :: | PlantRoot_diameter_per_seed_radius | ||
integer(kind=int32), | intent(in), | optional | :: | max_PlantNode_num | ||
character(len=*), | intent(in), | optional | :: | Variety | ||
character(len=*), | intent(in), | optional | :: | FileName | ||
integer(kind=int32), | intent(in), | optional | :: | max_leaf_num | ||
integer(kind=int32), | intent(in), | optional | :: | max_stem_num | ||
integer(kind=int32), | intent(in), | optional | :: | max_root_num | ||
logical, | intent(in), | optional | :: | profiler |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in), | optional | :: | config | ||
logical, | intent(in), | optional | :: | regacy | ||
real(kind=real64), | intent(in), | optional | :: | mass | ||
real(kind=real64), | intent(in), | optional | :: | water_content | ||
real(kind=real64), | intent(in), | optional | :: | radius | ||
real(kind=real64), | intent(in), | optional | :: | location(3) | ||
real(kind=real64), | intent(in), | optional | :: | x | ||
real(kind=real64), | intent(in), | optional | :: | y | ||
real(kind=real64), | intent(in), | optional | :: | z | ||
real(kind=real64), | intent(in), | optional | :: | PlantRoot_diameter_per_seed_radius | ||
integer(kind=int32), | intent(in), | optional | :: | max_PlantNode_num | ||
character(len=*), | intent(in), | optional | :: | Variety | ||
character(len=*), | intent(in), | optional | :: | FileName | ||
integer(kind=int32), | intent(in), | optional | :: | max_leaf_num | ||
integer(kind=int32), | intent(in), | optional | :: | max_stem_num | ||
integer(kind=int32), | intent(in), | optional | :: | max_root_num | ||
logical, | intent(in), | optional | :: | profiler |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in), | optional | :: | config | ||
logical, | intent(in), | optional | :: | regacy | ||
real(kind=real64), | intent(in), | optional | :: | mass | ||
real(kind=real64), | intent(in), | optional | :: | water_content | ||
real(kind=real64), | intent(in), | optional | :: | radius | ||
real(kind=real64), | intent(in), | optional | :: | location(3) | ||
real(kind=real64), | intent(in), | optional | :: | x | ||
real(kind=real64), | intent(in), | optional | :: | y | ||
real(kind=real64), | intent(in), | optional | :: | z | ||
real(kind=real64), | intent(in), | optional | :: | PlantRoot_diameter_per_seed_radius | ||
integer(kind=int32), | intent(in), | optional | :: | max_PlantNode_num | ||
character(len=*), | intent(in), | optional | :: | Variety | ||
character(len=*), | intent(in), | optional | :: | FileName | ||
integer(kind=int32), | intent(in), | optional | :: | max_leaf_num | ||
integer(kind=int32), | intent(in), | optional | :: | max_stem_num | ||
integer(kind=int32), | intent(in), | optional | :: | max_root_num | ||
logical, | intent(in), | optional | :: | profiler |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in), | optional | :: | FilePath | ||
character(len=*), | intent(in) | :: | FileName | |||
integer(kind=int32), | intent(inout), | optional | :: | SeedID | ||
logical, | intent(in), | optional | :: | withSTL | ||
logical, | intent(in), | optional | :: | withMesh |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
integer(kind=int32), | intent(in) | :: | StemID |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj | |||
integer(kind=int32), | intent(in) | :: | StemNodeID |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj | |||
integer(kind=int32), | intent(in) | :: | StemNodeID |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
real(kind=real64), | intent(in) | :: | dt | |||
type(Light_), | intent(inout), | optional | :: | light | ||
type(air_), | intent(in), | optional | :: | air | ||
real(kind=real64), | intent(in), | optional | :: | temp | ||
logical, | intent(in), | optional | :: | simple |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj | |||
logical, | intent(in), | optional | :: | stem | ||
logical, | intent(in), | optional | :: | leaf | ||
logical, | intent(in), | optional | :: | root |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj | |||
logical, | intent(in), | optional | :: | stem | ||
logical, | intent(in), | optional | :: | leaf | ||
logical, | intent(in), | optional | :: | root |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj | |||
logical, | intent(in), | optional | :: | stem | ||
logical, | intent(in), | optional | :: | leaf | ||
logical, | intent(in), | optional | :: | root | ||
real(kind=real64), | intent(in), | optional | :: | waterDensity |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj | |||
integer(kind=int32), | intent(in) | :: | id |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj | |||
integer(kind=int32), | intent(in) | :: | id |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
type(FEMDomain_), | intent(in) | :: | domain | |||
integer(kind=int32), | intent(in) | :: | id |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
integer(kind=int32), | intent(in), | optional | :: | StemID | ||
real(kind=real64), | intent(in), | optional | :: | StemLength(:) |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout), | target | :: | obj | ||
real(kind=real64), | intent(in), | optional | :: | penaltyparameter | ||
real(kind=real64), | intent(in), | optional | :: | groundLevel | ||
real(kind=real64), | intent(in), | optional | :: | disp(3) | ||
real(kind=real64), | intent(in), | optional | :: | x_min | ||
real(kind=real64), | intent(in), | optional | :: | x_max | ||
real(kind=real64), | intent(in), | optional | :: | y_min | ||
real(kind=real64), | intent(in), | optional | :: | y_max | ||
real(kind=real64), | intent(in), | optional | :: | z_min | ||
real(kind=real64), | intent(in), | optional | :: | z_max |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in) | :: | name |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in) | :: | name | |||
integer(kind=int32), | intent(in), | optional | :: | num_threads |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in) | :: | name | |||
integer(kind=int32), | intent(in), | optional | :: | num_threads |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in) | :: | name | |||
integer(kind=int32), | intent(in), | optional | :: | num_threads |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in) | :: | name | |||
integer(kind=int32), | intent(in), | optional | :: | num_threads |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
character(len=*), | intent(in) | :: | name |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj | |||
integer(kind=int32), | intent(in) | :: | StemNodeID |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
real(kind=real64), | intent(in) | :: | temp | |||
real(kind=real64), | intent(in) | :: | dt |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
real(kind=real64), | intent(in), | optional | :: | x | ||
real(kind=real64), | intent(in), | optional | :: | y | ||
real(kind=real64), | intent(in), | optional | :: | z |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(in) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
type(Light_), | intent(in) | :: | light |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
logical, | intent(in), | optional | :: | simple |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
integer(kind=int32), | intent(in), | optional | :: | stem_id | ||
integer(kind=int32), | intent(in), | optional | :: | root_id | ||
integer(kind=int32), | intent(in), | optional | :: | leaf_id | ||
logical, | intent(in), | optional | :: | debug |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj |
Type | Intent | Optional | Attributes | Name | ||
---|---|---|---|---|---|---|
class(soybean_), | intent(inout) | :: | obj | |||
integer(kind=int32), | intent(in), | optional | :: | StemNodeID | ||
integer(kind=int32), | intent(in), | optional | :: | RootNodeID | ||
real(kind=real64), | intent(in), | optional | :: | peti_width_ave | ||
real(kind=real64), | intent(in), | optional | :: | peti_width_sig | ||
real(kind=real64), | intent(in), | optional | :: | peti_size_ave | ||
real(kind=real64), | intent(in), | optional | :: | peti_size_sig | ||
real(kind=real64), | intent(in), | optional | :: | peti_angle_ave | ||
real(kind=real64), | intent(in), | optional | :: | peti_angle_sig | ||
real(kind=real64), | intent(in), | optional | :: | leaf_thickness_ave | ||
real(kind=real64), | intent(in), | optional | :: | leaf_thickness_sig | ||
real(kind=real64), | intent(in), | optional | :: | leaf_length_ave | ||
real(kind=real64), | intent(in), | optional | :: | leaf_length_sig | ||
real(kind=real64), | intent(in), | optional | :: | leaf_width_ave | ||
real(kind=real64), | intent(in), | optional | :: | leaf_width_sig | ||
real(kind=real64), | intent(in), | optional | :: | leaf_angle_sig | ||
real(kind=real64), | intent(in), | optional | :: | leaf_angle_ave |